If your SAS Life Science Analytics Framework 5.4.x environment includes R version 4.4.0 (Puppy Cup), then the R packages listed in the tables below are available for use.
Note the total number of available packages for your environment is dependent on whether you upgraded from an existing version of R (4.1) or are starting new with R 4.4.0.
Both upgrade and new installs of 4.4.0 receive the longer list of packages (211) listed in the second table below.
If you upgraded from R 4.1 then you also have the 9 additional packages (for a total of 220) listed in the first table available within your environment.
Special Note: You can upgrade an existing SAS® Life Science Analytics Framework 5.4.1b environment to R4.4.0 (from R4.1). The upgrade will include an OS upgrade to RHEL 8.8. However, it is not possible to upgrade the version of R within a current SAS® Life Science Analytics Framework 5.4 or SAS® Life Science Analytics Framework 5.4.1 environment.
Additional package list for R 4.1 to R 4.4.0 upgrade (upgrade also includes package list below):
| Package | Version |
| cellranger | 1.1.0 |
| conquer | 1.0.2 |
| maptools | 1.1-1 |
| markdown | 1.1 |
| matrixStats | 0.60.0 |
| openxlsx | 4.2.4 |
| readxl | 1.3.1 |
| rematch | 1.0.1 |
| rio | 0.5.27 |
Package list for both an Upgrade to and a New install of R 4.4.0:
| Package | Version |
| abind | 1.4-5 |
| askpass | 1.2.0 |
| backports | 1.5.0 |
| base | 4.4.0 |
| base64enc | 0.1-3 |
| BBmisc | 1.13 |
| bit | 4.0.5 |
| bit64 | 4.0.5 |
| boot | 1.3-30 |
| brio | 1.1.5 |
| broom | 1.0.6 |
| bslib | 0.7.0 |
| cachem | 1.1.0 |
| callr | 3.7.6 |
| car | 3.1-2 |
| carData | 3.0-5 |
| caret | 6.0-94 |
| checkmate | 2.3.1 |
| class | 7.3-22 |
| cli | 3.6.2 |
| clipr | 0.8.0 |
| clock | 0.7.0 |
| cluster | 2.1.6 |
| codetools | 0.2-20 |
| colorspace | 2.1-0 |
| commonmark | 1.9.1 |
| compiler | 4.4.0 |
| corrplot | 0.92 |
| cowplot | 1.1.3 |
| cpp11 | 0.4.7 |
| crayon | 1.5.2 |
| crul | 1.4.2 |
| curl | 5.2.1 |
| data.table | 1.15.4 |
| datasets | 4.4.0 |
| datawizard | 0.10.0 |
| desc | 1.4.3 |
| diagram | 1.6.5 |
| diffobj | 0.3.5 |
| digest | 0.6.35 |
| dplyr | 1.1.4 |
| e1071 | 1.7-14 |
| ellipsis | 0.3.2 |
| evaluate | 0.23 |
| fansi | 1.0.6 |
| farver | 2.1.2 |
| fastmap | 1.2.0 |
| fastmatch | 1.1-4 |
| flextable | 0.9.6 |
| fontawesome | 0.5.2 |
| fontBitstreamVera | 0.1.1 |
| fontLiberation | 0.1.0 |
| fontquiver | 0.2.1 |
| forcats | 1.0.0 |
| foreach | 1.5.2 |
| foreign | 0.8-86 |
| fs | 1.6.4 |
| future | 1.33.2 |
| future.apply | 1.11.2 |
| gdtools | 0.3.7 |
| generics | 0.1.3 |
| gfonts | 0.2.0 |
| ggforce | 0.4.2 |
| ggplot2 | 3.5.1 |
| ggpubr | 0.6.0 |
| ggraph | 2.2.1 |
| ggrepel | 0.9.5 |
| ggsci | 3.1.0 |
| ggsignif | 0.6.4 |
| globals | 0.16.3 |
| glue | 1.7.0 |
| gower | 1.0.1 |
| graphics | 4.4.0 |
| graphlayouts | 1.1.1 |
| grDevices | 4.4.0 |
| grid | 4.4.0 |
| gridExtra | 2.3 |
| gtable | 0.3.5 |
| hardhat | 1.3.1 |
| haven | 2.5.4 |
| highr | 0.11 |
| hms | 1.1.3 |
| htmltools | 0.5.8.1 |
| httpcode | 0.3.0 |
| httpuv | 1.6.15 |
| igraph | 2.0.3 |
| insight | 0.19.11 |
| ipred | 0.9-14 |
| isoband | 0.2.7 |
| iterators | 1.0.14 |
| jquerylib | 0.1.4 |
| jsonlite | 1.8.8 |
| KernSmooth | 2.23-22 |
| knitr | 1.47 |
| labeling | 0.4.3 |
| later | 1.3.2 |
| lattice | 0.22-6 |
| lava | 1.8.0 |
| lifecycle | 1.0.4 |
| listenv | 0.9.1 |
| lme4 | 1.1-35.3 |
| lmtest | 0.9-40 |
| lubridate | 1.9.3 |
| magrittr | 2.0.3 |
| MASS | 7.3-60.2 |
| Matrix | 1.7-0 |
| MatrixModels | 0.5-3 |
| memoise | 2.0.1 |
| methods | 4.4.0 |
| mgcv | 1.9-1 |
| mime | 0.12 |
| minqa | 1.2.7 |
| mlr | 2.19.1 |
| ModelMetrics | 1.2.2.2 |
| munsell | 0.5.1 |
| nlme | 3.1-164 |
| nloptr | 2.0.3 |
| nnet | 7.3-19 |
| numDeriv | 2016.8-1.1 |
| officer | 0.6.6 |
| openssl | 2.2.0 |
| parallel | 4.4.0 |
| parallelly | 1.37.1 |
| parallelMap | 1.5.1 |
| ParamHelpers | 1.14.1 |
| pbkrtest | 0.5.2 |
| pillar | 1.9.0 |
| pkgbuild | 1.4.4 |
| pkgconfig | 2.0.3 |
| pkgload | 1.3.4 |
| plyr | 1.8.9 |
| polyclip | 1.10-6 |
| polynom | 1.4-1 |
| praise | 1.0.0 |
| prettyunits | 1.2.0 |
| pROC | 1.18.5 |
| processx | 3.8.4 |
| prodlim | 2023.08.28 |
| progress | 1.2.3 |
| progressr | 0.14.0 |
| promises | 1.3.0 |
| proxy | 0.4-27 |
| ps | 1.7.6 |
| purrr | 1.0.2 |
| quantreg | 5.98 |
| R6 | 2.5.1 |
| ragg | 1.3.2 |
| rappdirs | 0.3.3 |
| RColorBrewer | 1.1-3 |
| Rcpp | 1.0.12 |
| RcppArmadillo | 0.12.8.3.0 |
| RcppEigen | 0.3.4.0.0 |
| readr | 2.1.5 |
| recipes | 1.0.10 |
| rematch2 | 2.1.2 |
| reshape2 | 1.4.4 |
| rlang | 1.1.3 |
| rmarkdown | 2.27 |
| rpart | 4.1.23 |
| rprojroot | 2.0.4 |
| rstatix | 0.7.2 |
| sass | 0.4.9 |
| scales | 1.3.0 |
| shape | 1.4.6.1 |
| shiny | 1.8.1.1 |
| sjlabelled | 1.2.0 |
| sourcetools | 0.1.7-1 |
| sp | 2.1-4 |
| SparseM | 1.82 |
| spatial | 7.3-17 |
| splines | 4.4.0 |
| SQUAREM | 2021.1 |
| stats | 4.4.0 |
| stats4 | 4.4.0 |
| stringi | 1.8.4 |
| stringr | 1.5.1 |
| survival | 3.6-4 |
| sys | 3.4.2 |
| systemfonts | 1.1.0 |
| tcltk | 4.4.0 |
| testthat | 3.2.1.1 |
| textshaping | 0.4.0 |
| tibble | 3.2.1 |
| tidygraph | 1.3.1 |
| tidyr | 1.3.1 |
| tidyselect | 1.2.1 |
| timechange | 0.3.0 |
| timeDate | 4032.109 |
| tinytex | 0.51 |
| tools | 4.4.0 |
| triebeard | 0.4.1 |
| tweenr | 2.0.3 |
| tzdb | 0.4.0 |
| urltools | 1.7.3 |
| utf8 | 1.2.4 |
| utils | 4.4.0 |
| uuid | 1.2-0 |
| vcd | 1.4-12 |
| vctrs | 0.6.5 |
| viridis | 0.6.5 |
| viridisLite | 0.4.2 |
| vroom | 1.6.5 |
| waldo | 0.5.2 |
| withr | 3.0.0 |
| xfun | 0.44 |
| XML | 3.99-0.16.1 |
| xml2 | 1.3.6 |
| xtable | 1.8-4 |
| yaml | 2.3.8 |
| zip | 2.3.1 |
| zoo | 1.8-12 |